The Fondos 2007 (objective 3) system was designed for the processing of nine European Territorial Cooperation Operational Programmes (POCTs). The Directorate General of Community Funds, besides having functional responsibility for the system, may carry out different actions for each POCT.
- In the Spain-Portugal programme (POCTEP), the DGFC is the Managing Authority (MA).
- In the Madeira-Azores-Canary Islands programme (POMAC), the Autonomous Community of the Canary Islands is the MA, but the DGFC offers the possibility of using Fondos 2007 for performance of its duties.
- In the Spain-France-Andorra programme and the Southwest European Space, the DGFC is the Certification Authority (CA).
- In the External Borders programme (formerly Spain-Morocco), the DGFC is both MA and CA.
- In the four remaining POCTs, the DGFC is the National Correspondent (NC) for their Spanish partners.